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nf-core/rnaseq
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnarna-seq
This is the development version of the pipeline.
Launch development version https://github.com/nf-core/rnaseq
  • Introduction
  • Usage
  • Parameters
  • Output
  • Releases
    • 3.22.2
    • 3.22.1
    • 3.22.0
    • 3.21.0
    • 3.20.0
    • 3.19.0
    • 3.18.0
    • 3.17.0
    • 3.16.1
    • 3.16.0
    • 3.15.1
    • 3.15.0
    • 3.14.0
    • 3.13.2
    • 3.13.1
    • 3.13.0
    • 3.12.0
    • 3.11.2
    • 3.11.1
    • 3.11.0
    • 3.10.1
    • 3.10
    • 3.9
    • 3.8.1
    • 3.8
    • 3.7
    • 3.6
    • 3.5
    • 3.4
    • 3.3
    • 3.2
    • 3.1
    • 3.0
    • 2.0
    • 1.4.2
    • 1.4.1
    • dev
Introduction Usage Parameters Output Releases
  • 3.22.2
  • 3.22.1
  • 3.22.0
  • 3.21.0
  • 3.20.0
  • 3.19.0
  • 3.18.0
  • 3.17.0
  • 3.16.1
  • 3.16.0
  • 3.15.1
  • 3.15.0
  • 3.14.0
  • 3.13.2
  • 3.13.1
  • 3.13.0
  • 3.12.0
  • 3.11.2
  • 3.11.1
  • 3.11.0
  • 3.10.1
  • 3.10
  • 3.9
  • 3.8.1
  • 3.8
  • 3.7
  • 3.6
  • 3.5
  • 3.4
  • 3.3
  • 3.2
  • 3.1
  • 3.0
  • 2.0
  • 1.4.2
  • 1.4.1
  • dev
run with
See the docs on how to configure the Seqera Platform CLI.
  • nf-core
  • Nextflow
  • Seqera Platform
video introduction
Play
subscribers
166
stars
1200
open issues
42
open PRs
14
last release
2 months ago
last update
2 months ago
included modules
bbmap_bbsplitbedtools_genomecovbowtie2_alignbowtie2_buildbracken_bracken and 64 more modules
included subworkflows
bam_dedup_stats_samtools_umicollapsebam_dedup_stats_samtools_umitoolsbam_dedup_umibam_markduplicates_picardbam_rseqc and 13 more subworkflows
contributors
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